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The treatment for ovarian cyst usually depends on the age of a person, the presence or lack of any symptoms, the appearance and size of the cyst, and whether or not they have undergone menopause. The best thing to do is watchful waiting or observation, especially if the cyst seems to be a small, functional cyst and the woman has not yet undergone menopause. Schedule an ultrasound scan for checking the cyst a month or so later to see whether it is gone or is still present.